PhytophthoraV1, Main, Exploration, bibRecord, 000478

Identification of CBL and CIPK gene families and functional characterization of CaCIPK1 under Phytophthora capsici in pepper (Capsicum annuum L.).

Identifieur interne : 000478 ( Main/Exploration ); précédent : 000477; suivant : 000479

Identification of CBL and CIPK gene families and functional characterization of CaCIPK1 under Phytophthora capsici in pepper (Capsicum annuum L.).

Auteurs : Xiao Ma [République populaire de Chine] ; Wen-Xian Gai [République populaire de Chine] ; Yi-Ming Qiao [République populaire de Chine] ; Muhammad Ali [République populaire de Chine] ; Ai-Min Wei [République populaire de Chine] ; De-Xu Luo [République populaire de Chine] ; Quan-Hui Li [République populaire de Chine] ; Zhen-Hui Gong [République populaire de Chine]

Source :

BMC genomics [ 1471-2164 ] ; 2019.

RBID : pubmed:31653202

Descripteurs français

KwdFr :
- Analyse de séquence (MeSH), Capsicum (effets des médicaments et des substances chimiques), Capsicum (génétique), Capsicum (microbiologie), Capsicum (physiologie), Chromosomes de plante (génétique), Duplication de gène (MeSH), Espace intracellulaire (métabolisme), Facteur de croissance végétal (pharmacologie), Phylogenèse (MeSH), Phytophthora (physiologie), Protéines végétales (génétique), Protéines végétales (métabolisme), Stress physiologique (génétique), Transport des protéines (génétique).
MESH :
- effets des médicaments et des substances chimiques : Capsicum.
- génétique : Capsicum, Chromosomes de plante, Protéines végétales, Stress physiologique, Transport des protéines.
- microbiologie : Capsicum.
- métabolisme : Espace intracellulaire, Protéines végétales.
- pharmacologie : Facteur de croissance végétal.
- physiologie : Capsicum, Phytophthora.
- Analyse de séquence, Duplication de gène, Phylogenèse.

English descriptors

KwdEn :
- Capsicum (drug effects), Capsicum (genetics), Capsicum (microbiology), Capsicum (physiology), Chromosomes, Plant (genetics), Gene Duplication (MeSH), Intracellular Space (metabolism), Phylogeny (MeSH), Phytophthora (physiology), Plant Growth Regulators (pharmacology), Plant Proteins (genetics), Plant Proteins (metabolism), Protein Transport (genetics), Sequence Analysis (MeSH), Stress, Physiological (genetics).
MESH :
- chemical , genetics : Plant Proteins.
- chemical , metabolism : Plant Proteins.
- chemical , pharmacology : Plant Growth Regulators.
- drug effects : Capsicum.
- genetics : Capsicum, Chromosomes, Plant, Protein Transport, Stress, Physiological.
- metabolism : Intracellular Space.
- microbiology : Capsicum.
- physiology : Capsicum, Phytophthora.
- Gene Duplication, Phylogeny, Sequence Analysis.

Abstract

BACKGROUND

Calcineurin B-like proteins (CBLs) are major Ca

RESULTS

In the present study, nine CaCBL and 26 CaCIPK genes were identified in pepper and the genes were named based on their chromosomal order. Phylogenetic and structural analysis revealed that CaCBL and CaCIPK genes clustered in four and five groups, respectively. Quantitative real-time PCR (qRT-PCR) assays showed that CaCBL and CaCIPK genes were constitutively expressed in different tissues, and their expression patterns were altered when the plant was exposed to Phytophthora capsici, salt and osmotic stress. CaCIPK1 expression changed in response to stress, including exposure to P. capsici, NaCl, mannitol, salicylic acid (SA), methyl jasmonate (MeJA), abscisic acid (ABA), ethylene (ETH), cold and heat stress. Knocking down CaCIPK1 expression increased the susceptibility of pepper to P. capsici, reduced root activity, and altered the expression of defense related genes. Transient overexpression of CaCIPK1 enhanced H

CONCLUSIONS

Nine CaCBL and 26 CaCIPK genes were identified in the pepper genome, and the expression of most CaCBL and CaCIPK genes were altered when the plant was exposed to stress. In particular, we found that CaCIPK1 is mediates the pepper plant's defense against P. capsici. These results provide the groundwork for further functional characterization of CaCBL and CaCIPK genes in pepper.

DOI: 10.1186/s12864-019-6125-z
PubMed: 31653202
PubMed Central: PMC6814991

Affiliations:

République populaire de Chine

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 000360
to stream Main, to step Curation: 000360

Le document en format XML

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<term>Capsicum (microbiology)</term>
<term>Capsicum (physiology)</term>
<term>Chromosomes, Plant (genetics)</term>
<term>Gene Duplication (MeSH)</term>
<term>Intracellular Space (metabolism)</term>
<term>Phylogeny (MeSH)</term>
<term>Phytophthora (physiology)</term>
<term>Plant Growth Regulators (pharmacology)</term>
<term>Plant Proteins (genetics)</term>
<term>Plant Proteins (metabolism)</term>
<term>Protein Transport (genetics)</term>
<term>Sequence Analysis (MeSH)</term>
<term>Stress, Physiological (genetics)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de séquence (MeSH)</term>
<term>Capsicum (effets des médicaments et des substances chimiques)</term>
<term>Capsicum (génétique)</term>
<term>Capsicum (microbiologie)</term>
<term>Capsicum (physiologie)</term>
<term>Chromosomes de plante (génétique)</term>
<term>Duplication de gène (MeSH)</term>
<term>Espace intracellulaire (métabolisme)</term>
<term>Facteur de croissance végétal (pharmacologie)</term>
<term>Phylogenèse (MeSH)</term>
<term>Phytophthora (physiologie)</term>
<term>Protéines végétales (génétique)</term>
<term>Protéines végétales (métabolisme)</term>
<term>Stress physiologique (génétique)</term>
<term>Transport des protéines (génétique)</term>
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<keywords scheme="MESH" type="chemical" qualifier="pharmacology" xml:lang="en"><term>Plant Growth Regulators</term>
</keywords>
<keywords scheme="MESH" qualifier="drug effects" xml:lang="en"><term>Capsicum</term>
</keywords>
<keywords scheme="MESH" qualifier="effets des médicaments et des substances chimiques" xml:lang="fr"><term>Capsicum</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Capsicum</term>
<term>Chromosomes, Plant</term>
<term>Protein Transport</term>
<term>Stress, Physiological</term>
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<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Capsicum</term>
<term>Chromosomes de plante</term>
<term>Protéines végétales</term>
<term>Stress physiologique</term>
<term>Transport des protéines</term>
</keywords>
<keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Intracellular Space</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Capsicum</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Capsicum</term>
</keywords>
<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Espace intracellulaire</term>
<term>Protéines végétales</term>
</keywords>
<keywords scheme="MESH" qualifier="pharmacologie" xml:lang="fr"><term>Facteur de croissance végétal</term>
</keywords>
<keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Capsicum</term>
<term>Phytophthora</term>
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<term>Phytophthora</term>
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<keywords scheme="MESH" xml:lang="en"><term>Gene Duplication</term>
<term>Phylogeny</term>
<term>Sequence Analysis</term>
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<keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence</term>
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<front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b>
</p>
<p>Calcineurin B-like proteins (CBLs) are major Ca</p>
</div>
<div type="abstract" xml:lang="en"><p><b>RESULTS</b>
</p>
<p>In the present study, nine CaCBL and 26 CaCIPK genes were identified in pepper and the genes were named based on their chromosomal order. Phylogenetic and structural analysis revealed that CaCBL and CaCIPK genes clustered in four and five groups, respectively. Quantitative real-time PCR (qRT-PCR) assays showed that CaCBL and CaCIPK genes were constitutively expressed in different tissues, and their expression patterns were altered when the plant was exposed to Phytophthora capsici, salt and osmotic stress. CaCIPK1 expression changed in response to stress, including exposure to P. capsici, NaCl, mannitol, salicylic acid (SA), methyl jasmonate (MeJA), abscisic acid (ABA), ethylene (ETH), cold and heat stress. Knocking down CaCIPK1 expression increased the susceptibility of pepper to P. capsici, reduced root activity, and altered the expression of defense related genes. Transient overexpression of CaCIPK1 enhanced H</p>
</div>
<div type="abstract" xml:lang="en"><p><b>CONCLUSIONS</b>
</p>
<p>Nine CaCBL and 26 CaCIPK genes were identified in the pepper genome, and the expression of most CaCBL and CaCIPK genes were altered when the plant was exposed to stress. In particular, we found that CaCIPK1 is mediates the pepper plant's defense against P. capsici. These results provide the groundwork for further functional characterization of CaCBL and CaCIPK genes in pepper.</p>
</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">31653202</PMID>
<DateCompleted><Year>2020</Year>
<Month>03</Month>
<Day>02</Day>
</DateCompleted>
<DateRevised><Year>2020</Year>
<Month>03</Month>
<Day>02</Day>
</DateRevised>
<Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1471-2164</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>20</Volume>
<Issue>1</Issue>
<PubDate><Year>2019</Year>
<Month>Oct</Month>
<Day>25</Day>
</PubDate>
</JournalIssue>
<Title>BMC genomics</Title>
<ISOAbbreviation>BMC Genomics</ISOAbbreviation>
</Journal>
<ArticleTitle>Identification of CBL and CIPK gene families and functional characterization of CaCIPK1 under Phytophthora capsici in pepper (Capsicum annuum L.).</ArticleTitle>
<Pagination><MedlinePgn>775</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1186/s12864-019-6125-z</ELocationID>
<Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">Calcineurin B-like proteins (CBLs) are major Ca<sup>2+</sup>
 sensors that interact with CBL-interacting protein kinases (CIPKs) to regulate growth and development in plants. The CBL-CIPK network is involved in stress response, yet little is understood on how CBL-CIPK function in pepper (Capsicum annuum L.), a staple vegetable crop that is threatened by biotic and abiotic stressors.</AbstractText>
<AbstractText Label="RESULTS" NlmCategory="RESULTS">In the present study, nine CaCBL and 26 CaCIPK genes were identified in pepper and the genes were named based on their chromosomal order. Phylogenetic and structural analysis revealed that CaCBL and CaCIPK genes clustered in four and five groups, respectively. Quantitative real-time PCR (qRT-PCR) assays showed that CaCBL and CaCIPK genes were constitutively expressed in different tissues, and their expression patterns were altered when the plant was exposed to Phytophthora capsici, salt and osmotic stress. CaCIPK1 expression changed in response to stress, including exposure to P. capsici, NaCl, mannitol, salicylic acid (SA), methyl jasmonate (MeJA), abscisic acid (ABA), ethylene (ETH), cold and heat stress. Knocking down CaCIPK1 expression increased the susceptibility of pepper to P. capsici, reduced root activity, and altered the expression of defense related genes. Transient overexpression of CaCIPK1 enhanced H<sub>2</sub>
O<sub>2</sub>
 accumulation, cell death, and expression of genes involved in defense.</AbstractText>
<AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">Nine CaCBL and 26 CaCIPK genes were identified in the pepper genome, and the expression of most CaCBL and CaCIPK genes were altered when the plant was exposed to stress. In particular, we found that CaCIPK1 is mediates the pepper plant's defense against P. capsici. These results provide the groundwork for further functional characterization of CaCBL and CaCIPK genes in pepper.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Ma</LastName>
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   |texte=   Identification of CBL and CIPK gene families and functional characterization of CaCIPK1 under Phytophthora capsici in pepper (Capsicum annuum L.).
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	Serveur d'exploration Phytophthora
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Serveur d'exploration Phytophthora

Identification of CBL and CIPK gene families and functional characterization of CaCIPK1 under Phytophthora capsici in pepper (Capsicum annuum L.).

Identification of CBL and CIPK gene families and functional characterization of CaCIPK1 under Phytophthora capsici in pepper (Capsicum annuum L.).

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